getGenes: getGenes
In cummeRbund: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Description Usage Arguments Details Value Note Author(s) References Examples

Primary accessor from a CuffSet object to retrive all related information for >1 (MANY) given genes, indexed by gene_id or gene_short_name.

1 2	## S4 method for signature 'CuffSet' getGenes(object, geneIdList, sampleIdList=NULL)

`object`	An object of class 'CuffSet' (Primary 'pointer' object for Cufflinks data).
`geneIdList`	A vector of gene_ids or gene_short_namesto identify which genes for which you would like to retrieve all information.
`sampleIdList`	A vector of sample names used to subset or re-order samples in returned object

None.

Returns a CuffGeneSet object containing all related information for a given set of gene_id or gene_short_name values

Right now, this does not return an error if it cannot find a gene. (this is probably a bad thing...)

Loyal A. Goff

None.

	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create master CuffSet object
	data(sampleData)
	sampleIDs
	myGene<-getGenes(a,sampleIDs) # Retrieve all information for a set of 20 'sample' genes.