csBoxplot: csBoxplot

Description Usage Arguments Details Value Note Author(s) References Examples

Description

Creates a ggplot2 plot object with a geom_box layer displaying summary statistics for FPKM values across samples (x).

Usage

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## S4 method for signature 'CuffData'
csBoxplot(object, logMode=TRUE, pseudocount=0.0001, replicates=FALSE,...)

Arguments

object

An object of class CuffData.

logMode

A logical argument to log10 -transform FPKM values.

pseudocount

Value added to FPKM to avoid log-transform issues.

replicates

A logical value whether or not to plot individual replicates or aggregate condition values.

...

Additional arguments to csBoxplot

Details

None

Value

A ggplot2 plot object with a geom_box layer.

Note

None

Author(s)

Loyal A. Goff

References

None

Examples

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	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create CuffSet object
	genes<-a@genes #CuffData object for all genes
	csBoxplot(genes)


cummeRbund documentation built on May 20, 2017, 9:18 p.m.
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