fpkmMatrix

Share:

Description

Retrieve FPKM values as gene by condition (fpkmMatrix) or gene by replicate (repFpkmMatrix) matrix

Usage

1
2
3
4
## S4 method for signature 'CuffData'
fpkmMatrix(object,fullnames=FALSE,sampleIdList)
## S4 method for signature 'CuffData'
repFpkmMatrix(object,fullnames=FALSE,repIdList)

Arguments

object

An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature')

fullnames

A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels)

sampleIdList

A vector of sample names to subset the resulting matrix.

repIdList

A vector of sample names to subset the resulting matrix.

Details

None.

Value

A feature x condition matrix of FPKM values.

Note

None

Author(s)

Loyal A. Goff

References

None.

Examples

1
2
3

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.