Files in exomePeak2

Bias Awared Peak Calling and Quantification for MeRIP-Seq

README.md R/format_argg.R R/exomePeakCalling.R R/consDESeq2_DM.R R/plotExonLength.R R/mclust_bg.R R/convertTxDb.R R/GLM_inference.R R/call_peaks_with_GLM.R R/AllGenerics.R R/flank_on_exons.R R/glmDM.R R/Allaccessors.R R/Results.R R/consDESeq2_M.R R/reads_five_POS.R R/exportResults.R R/plotReadsGC.R R/ExonPlot.R R/split_by_name.R R/plotSizeFactors.R R/exome_bins_from_txdb.R R/reduce_peaks.R R/AllClasses.R R/plotLfcGC.R R/replace_bg.R R/decision_deseq2.R R/quiet.R R/normalizeGC.R R/GC_content_over_grl.R R/disj_background.R R/reads_five_POS_rev.R R/estimateSeqDepth.R R/scanMeripBAM.R R/exons_by_unique_gene.R R/exomePeak2.R R/ctest.R R/glmM.R R/remove_introns.R vignettes/Vignette_V_0.99.Rmd man/MeripBamFileList-class.Rd man/plotReadsGC-methods.Rd man/flank_on_exons.Rd man/LibraryType-methods.Rd man/exons_by_unique_gene.Rd man/reads_five_POS.Rd man/quiet.Rd man/call_peaks_with_GLM.Rd man/normalizeGC-methods.Rd man/disj_background.Rd man/exportResults-methods.Rd man/reduce_peaks.Rd man/glmDM-methods.Rd man/glmM-methods.Rd man/plotSizeFactors-methods.Rd man/convertTxDb.Rd man/split_by_name.Rd man/scanMeripBAM.Rd man/ExonPlot.Rd man/exomePeak2.Rd man/reads_five_POS_rev.Rd man/SummarizedExomePeak-class.Rd man/exomePeak2Results-methods.Rd man/remove_introns.Rd man/plotExonLength-methods.Rd man/exomePeakCalling-methods.Rd man/plotLfcGC-methods.Rd man/GC_content_over_grl.Rd man/exome_bins_from_txdb.Rd man/decision_deseq2.Rd man/Results-methods.Rd man/consDESeq2_M.Rd man/mclust_bg.Rd man/GCsizeFactors-methods.Rd man/GLM_inference.Rd man/consDESeq2_DM.Rd man/ctest.Rd man/Parameter-methods.Rd man/replace_bg.Rd man/estimateSeqDepth-methods.Rd inst/doc/Vignette_V_0.99.Rmd inst/doc/Vignette_V_0.99.R