fgsea: Fast Gene Set Enrichment Analysis

The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

Package details

AuthorGennady Korotkevich [aut], Vladimir Sukhov [aut], Nikolay Budin [ctb], Alexey Sergushichev [aut, cre]
Bioconductor views DifferentialExpression GeneExpression GeneSetEnrichment Pathways
MaintainerAlexey Sergushichev <alsergbox@gmail.com>
LicenseMIT + file LICENCE
URL https://github.com/ctlab/fgsea/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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fgsea documentation built on Nov. 8, 2020, 5:22 p.m.