fgsea: Fast Gene Set Enrichment Analysis

The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

Package details

AuthorGennady Korotkevich [ctb], Alexey Sergushichev [aut, cre]
Bioconductor views DifferentialExpression GeneExpression GeneSetEnrichment Pathways
MaintainerAlexey Sergushichev <[email protected]>
LicenseMIT + file LICENCE
Version1.8.0
URL https://github.com/ctlab/fgsea/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("fgsea")

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fgsea documentation built on Nov. 1, 2018, 4:28 a.m.