writeGmtPathways: Write collection of pathways (list of vectors) to a gmt file
In fgsea: Fast Gene Set Enrichment Analysis
Description
Usage
Arguments
Examples
Description
Write collection of pathways (list of vectors) to a gmt file
Usage
1
writeGmtPathways(pathways, gmt.file)
Arguments
pathways
a named list of vectors with gene ids
gmt.file
name of the output file
Examples
1
2
data(examplePathways)
writeGmtPathways(examplePathways, tempfile("examplePathways", fileext=".gmt"))
Example output
fgsea documentation built on Nov. 8, 2020, 5:22 p.m.
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Description Usage Arguments Examples
Description
Write collection of pathways (list of vectors) to a gmt file
Usage
1 | writeGmtPathways(pathways, gmt.file)
|
Arguments
pathways |
a named list of vectors with gene ids |
gmt.file |
name of the output file |
Examples
1 2 | data(examplePathways)
writeGmtPathways(examplePathways, tempfile("examplePathways", fileext=".gmt"))
|
Example output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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