reactomePathways: Returns a list of Reactome pathways for given Entrez gene IDs
In fgsea: Fast Gene Set Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
Returns a list of Reactome pathways for given Entrez gene IDs
Usage
1
reactomePathways(genes)
Arguments
genes
Entrez IDs of query genes.
Value
A list of vectors with gene sets.
Examples
1
2
data(exampleRanks)
pathways <- reactomePathways(names(exampleRanks))
Example output
Loading required package: Rcpp
Loading required namespace: reactome.db
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
fgsea documentation built on Nov. 8, 2020, 5:22 p.m.
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Description Usage Arguments Value Examples
Description
Returns a list of Reactome pathways for given Entrez gene IDs
Usage
1 | reactomePathways(genes)
|
Arguments
genes |
Entrez IDs of query genes. |
Value
A list of vectors with gene sets.
Examples
1 2 | data(exampleRanks)
pathways <- reactomePathways(names(exampleRanks))
|
Example output
Loading required package: Rcpp
Loading required namespace: reactome.db
'select()' returned 1:many mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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