Files in fgsea
Fast Gene Set Enrichment Analysis
LICENCE
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/util.h
src/esCalculation.cpp
src/fastGSEA.h
src/fgseaMultilevelSupplement.h
src/RcppExports.cpp
src/util.cpp
src/fgseaMultilevelSupplement.cpp
src/esCalculation.h
src/fastGSEA.cpp
src/fgseaMultilevel.cpp
src/fgseaMultilevel.h
data/examplePathways.rda
data/exampleRanks.rda
R/fgsea.R
R/fgsea-package.R
R/RcppExports.R
R/fgseaORA.R
R/pathways.R
R/plot.R
R/fgseaMultilevel.R
vignettes/fgsea-tutorial.Rmd
man/fora.Rd
man/gmtPathways.Rd
man/calcGseaStat.Rd
man/collapsePathways.Rd
man/fgseaSimple.Rd
man/writeGmtPathways.Rd
man/reactomePathways.Rd
man/fgsea.Rd
man/multilevelImpl.Rd
man/multilevelError.Rd
man/plotGseaTable.Rd
man/fgseaMultilevel.Rd
man/fgseaLabel.Rd
man/exampleRanks.Rd
man/plotEnrichment.Rd
man/examplePathways.Rd
man/collapsePathwaysORA.Rd
man/calcGseaStatBatchCpp.Rd
man/fgseaSimpleImpl.Rd
man/mapIdsList.Rd
tests/testthat.R
tests/testthat/test_gsea_analysis.R
tests/testthat/test_gsea_multilevel.R
tests/testthat/test_plot.R
tests/testthat/test_pathways.R
tests/testthat/test_gsea_stat.R
inst/run_broad_gsea.R
inst/th1_gsea.R
inst/gene_reactome_pathways.R
inst/gen_gene_ranks.R
inst/gse19429_gsea.R
inst/CITATION
inst/doc/fgsea-tutorial.Rmd
inst/doc/fgsea-tutorial.html
inst/doc/fgsea-tutorial.R
inst/extdata/naive.vs.th1.rnk
inst/extdata/GDS289.tsv
inst/extdata/mouse.reactome.gmt
inst/extdata/pathway.txt
inst/extdata/fgsea_res.tsv
inst/exact/runFgsea.R
inst/exact/exact_readme.md
inst/exact/exact.cpp
