Description Objects from the Class Slots Extends Methods Author(s) References See Also

A class to represent flowMerge objects

The object unites the flowMerge model output and the data being modeled and contains additional slots for various characteristics of a merged cluster solution, including the entropy of clustering.

`merged`

:The number of observations merged at the current step in the algorithm.

`mtree`

:A treeâ€“structured graph representing the order of merged components in the model. Inspired by SPADE. (Bendall et al.)

`entropy`

:The entropy of clustering of the current solution.

`DATA`

:An environment whose first element contains the flowFrame with the data modeled by this flowMerge object

`expName`

:See the

`flowClust`

package for details`varNames`

:See the

`flowClust`

package for details`K`

:The number of clusters in the merged solution. See the

`flowClust`

package for details`w`

:The proportions for each component in the merged solution. See the

`flowClust`

package for details`mu`

:The means of the components in the merged solution. See the

`flowClust`

package for details`sigma`

:The covraiances of the components in the merged solution. See the

`flowClust`

package for details`lambda`

:See the

`flowClust`

package for details`nu`

:See the

`flowClust`

package for details`z`

:See the

`flowClust`

package for details`u`

:The uncertainties for each data point.

`label`

:See the

`flowClust`

package for details`uncertainty`

:See the

`flowClust`

package for details`ruleOutliers`

:See the

`flowClust`

package for details`flagOutliers`

:See the

`flowClust`

package for details`rm.min`

:See the

`flowClust`

package for details`rm.max`

:See the

`flowClust`

package for details`logLike`

:See the

`flowClust`

package for details`BIC`

:See the

`flowClust`

package for details`ICL`

:See the

`flowClust`

package for details

Class `"flowObj"`

, directly.
Class `"flowClust"`

, by class "flowObj", distance 2.

- getData
`signature(obj = "flowMerge")`

: Retrieves the`flowFrame`

in the`DATA`

environment slot.- plot
`signature(x = "flowMerge", y = "missing")`

: Plots the clusters in this object.- summary
`signature(x="flowMerge")`

: Prints a summary of the object.- show
`signature(x="flowMerge")`

: Prints information about the object.

Greg Finak <greg.finak@ircm.qc.ca>

Finak G, Bashasharti A, Brinkmann R, Gottardo R. Merging Mixture Model Components for Improved Cell Population Identification in High Throughput Flow Cytometry Data (Submitted)

flowObj-class

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