aln: Precalculated alignment statistics of a crispr screen

In gCrisprTools: Suite of Functions for Pooled Crispr Screen QC and Analysis

Description

Example alignment matrix file for the provided example Crispr screen. All sample, gRNA, and Gene information has been anonymized and randomized.

Source

Genentech, Inc.

See Also

Please see ‘vignettes/Crispr_example_workflow.R’ for details.

Examples

data("aln")
head(aln)

Example output

PANTHER.db version 1.0.3
             SAMPLE_1 SAMPLE_2 SAMPLE_3 SAMPLE_4 SAMPLE_5 SAMPLE_6 SAMPLE_7
targets       7004519  6183983  5738954  6309065  6615134  6156333  7792838
nomatch        743882   607080   561278   667729   540513   648896   652940
rejections    1428342  1122692  1148612  1232306  1145034   963777  1336762
double_match    32428    18729    16854    23830    22156    27811    32852
             SAMPLE_8 SAMPLE_9
targets       7934066  5646518
nomatch        786835   470447
rejections    1591687  1006863
double_match    23152    25757

gCrisprTools documentation built on Nov. 8, 2020, 8:17 p.m.