ct.getPanther: Extract a Named List of Entrez IDs Annotated to Each Pathway...
In gCrisprTools: Suite of Functions for Pooled Crispr Screen QC and Analysis
Description
Usage
Arguments
Value
Author(s)
Description
This is a function that invokes the PANTHER.db Bioconductor library to extract a list of pathway mappings
to be used in gene set enrichment tests. Specifically, the function returns a named list of pathways, where each element contains
Entrez IDs. Users should not generally call this function directly as it is invoked internally by the higher-level
ct.PantherPathwayEnrichment() function.
Usage
1
ct.getPanther(species = c("human", "mouse"))
Arguments
species
The species of the cells used in the screen. Currently only 'human' or 'mouse' are supported.
Value
A named list of pathways from PANTHER.db.
Author(s)
Russell Bainer, Steve Lianoglou.
gCrisprTools documentation built on Nov. 8, 2020, 8:17 p.m.
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Description Usage Arguments Value Author(s)
Description
This is a function that invokes the PANTHER.db Bioconductor library to extract a list of pathway mappings
to be used in gene set enrichment tests. Specifically, the function returns a named list of pathways, where each element contains
Entrez IDs. Users should not generally call this function directly as it is invoked internally by the higher-level
ct.PantherPathwayEnrichment() function.
Usage
1 | ct.getPanther(species = c("human", "mouse"))
|
Arguments
species |
The species of the cells used in the screen. Currently only 'human' or 'mouse' are supported. |
Value
A named list of pathways from PANTHER.db.
Author(s)
Russell Bainer, Steve Lianoglou.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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