ct.GREATdb: Update a gene-centric msdb object for GREAT-style enrichment...
In gCrisprTools: Suite of Functions for Pooled Crispr Screen QC and Analysis
Description
Usage
Arguments
Value
Description
Update a gene-centric msdb object for GREAT-style enrichment analysis using a specified CRISPR annotation.
Usage
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ct.GREATdb(
annotation,
gsdb = getMSigGeneSetDb(c("h", "c2"), "human"),
minsize = 10
)
Arguments
annotation
an annotation object returned by ct.prepareAnnotation().
gsdb
A gene-centric GeneSetDb object to conform to the relevant peakwise dataset.
minsize
Minimum number of targets required to consider a geneset valid for analysis.
Value
A new GeneSetDb object with the features annotated genewise to pathways.
gCrisprTools documentation built on Nov. 8, 2020, 8:17 p.m.
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Description Usage Arguments Value
Description
Update a gene-centric msdb object for GREAT-style enrichment analysis using a specified CRISPR annotation.
Usage
1 2 3 4 5 | ct.GREATdb(
annotation,
gsdb = getMSigGeneSetDb(c("h", "c2"), "human"),
minsize = 10
)
|
Arguments
annotation |
an annotation object returned by |
gsdb |
A gene-centric |
minsize |
Minimum number of targets required to consider a geneset valid for analysis. |
Value
A new GeneSetDb object with the features annotated genewise to pathways.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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