API for gep2pep
Creation and Analysis of Pathway Expression Profiles (PEPs)
| Global functions | |
|---|---|
| .buildGene2SetIndex | Source code |
| .doPSEA | Source code |
| .exportCollectionsInfo | Source code |
| .fastKSES | Source code |
| .fastKSp | Source code |
| .getPEPRanks | Source code |
| .loadCollection | Source code |
| .loadPEPs | Source code |
| .loadPerts | Source code |
| .makeCollectionIDs | Source code |
| .mergePEPs | Source code |
| .storeCachedRanks | Source code |
| CategorizedCollection | Man page Source code |
| CategorizedCollection-class | Man page |
| CondSEA | Man page Source code |
| PathSEA | Man page Source code |
| addSingleGeneSets | Man page Source code |
| as.CategorizedCollection | Man page Source code |
| attachInfo | Source code |
| buildPEPs | Man page Source code |
| checkGEPsFormat | Source code |
| checkRepository | Man page Source code |
| checkSets | Source code |
| clearCache | Man page Source code |
| convertFromGSetClass | Source code |
| createMergedRepository | Man page Source code |
| createRepository | Man page Source code |
| dummyFunction | Source code |
| exportSEA | Man page Source code |
| gene2pathways | Man page Source code |
| gep2pep | Man page Source code |
| gep2pep-package | Man page |
| getCollections | Man page Source code |
| getDetails | Man page Source code |
| getPEPs | Source code |
| getResults | Man page Source code |
| get_repo_prjname | Source code |
| gsea | Source code |
| importFromRawMode | Man page Source code |
| importMSigDB.xml | Man page Source code |
| ks.test.2 | Source code |
| loadCollection | Man page Source code |
| loadESmatrix | Man page Source code |
| loadPVmatrix | Man page Source code |
| loadSampleGEP | Man page Source code |
| loadSamplePWS | Man page Source code |
| makeCollectionIDs | Man page Source code |
| openRepository | Man page Source code |
| pwList2pwStruct | Source code |
| rankPEPsByCols.ES | Source code |
| rankPEPsByCols.NES | Source code |
| rankPEPsByCols.SPV | Source code |
| rankPEPsByRows.ES | Source code |
| say | Source code |
| setId2setName | Man page Source code |
| storePEPs | Source code |
