Files in goProfiles

goProfiles: an R package for the statistical analysis of functional profiles

README.md R/chiDisjoint.R R/internal.compareGOProf.R R/chiIntersect.R R/rndExpandedGOProfile.R R/multinomial.R R/internal.varDifStatPP0.R R/normIntLength.R R/as.ExpandedGOProfile.R R/equivSummary.r R/pvalueIntersectLinCombChisq.R R/frelGO.R R/ngenes.default.R R/as.GOTerms.frame.R R/plotProfiles.R R/varDifStatPP0.R R/fitGOProfile.R R/as.ExpandedGOProfile.default.R R/dEuclid2.R R/generate.multinomial.R R/ngenes.ExpandedGOProfile.R R/ipvaluePnP0LinCombChisq.R R/sigma.restrict.R R/GOTermsList.R R/completeNames.R R/equivalentGOProfiles.R R/chiRestrict.R R/GOTermsFrame2GOTermsList.R R/covGO.ExpandedGOProfile.R R/belongs.to.R R/contrast.r R/compSummary.R R/internal.covGO.R R/contractedProfile.R R/dimsGO.R R/ipvaluePQLinCombChisq.R R/fisherGOProfiles.R R/expandCol.R R/varDifStatPnQm.R R/sum.and.R R/qlcombChisq.R R/completeMat.R R/BioCpack2EntrezIDS.R R/compareProfilesLists.R R/varDifStatPP0.default.R R/plcombChisq.R R/coverage.r R/pvaluePnP0LinCombChisq.R R/niceProfile.R R/equivClust2pdf.R R/clustKidneyMF2.R R/ngenes.matrix.R R/idEuclid2P0.R R/sigma.intersect.R R/vecProfile.R R/shortName.R R/ngenes.BasicGOProfile.R R/has.element.R R/kidneyGeneLists.R R/expandNames.R R/meanICLength.R R/expandedLevel.R R/geometricProfile.R R/BioCprobes2Entrez.R R/secondOrderMarginals.R R/has.ngenes.attr.R R/as.ExpandedGOProfile.ExpandedGOProfile.R R/rndGO.R R/as.GOTerms.list.R R/expandRndGO.R R/lenGO.R R/BioCpack2Profiles.R R/lcombChisqParsOK.R R/expandTerm.R R/internal.fitGOProf.R R/basicProfile.R R/fullGOProfile.R R/mergeProfilesLists.R R/table2xs.R R/compareGeneLists.R R/ngenes.i.R R/reset.generation.multinomial.R R/ipvalueP1Q1PQLinCombChisq.R R/haveGO.R R/compareGOProfiles.R R/covGO.R R/fullSetOfNames.R R/pvalueRestrictLinCombChisq.R R/internal.enrichProfile.R R/seDifStatPP0.R R/seDifStatPnQm.R R/profileEquiv_topDown2.R R/expandedProfile.R R/haveEntrezID.R R/ipvaluePnPmLinCombChisq.R R/pvalueExcludingLinCombChisq.R R/sum.if.R R/internal.enrich.R R/getAncestorsLst.R R/has.numGenes.attr.R R/printProfiles.R R/ngenes.r R/covGO.default.R R/varDifStatPP0.ExpandedGOProfile.R R/dgetGO.R R/chiPnP0Correct.R R/internal.equivalentGOProf.R R/contractCol.R R/rawProfile.R R/toNumVec.R R/contrMatrix.R R/idEuclid2.R R/getGOLevel.R R/sigma.excluding.R R/rlcombChisq.R R/setN.multinomial.R R/ngenes.numeric.R R/mergeProfiles.R R/internal.varDifStatPnQm.R R/estimProbPrecision.R man/prostateIds.Rd man/equivalentGOProfiles.Rd man/GOTermsList.Rd man/goProfiles-package.Rd man/plotProfiles.Rd man/drosophila.Rd man/expandedProfile.Rd man/compareGOProfiles.Rd man/expandedLevel.Rd man/CD4ids.Rd man/ngenes.rd man/conversionFunctions.Rd man/omimIds.Rd man/printProfiles.Rd man/iterEquivClust.Rd man/compSummary.Rd man/clustKidneyMF2.Rd man/compareGeneLists.Rd man/fisherGOProfiles.Rd man/equivClust2pdf.Rd man/kidneyGeneLists.Rd man/compareProfilesLists.Rd man/hugoIds.Rd man/fitGOProfile.Rd man/equivClust.Rd man/contractedProfile.rd man/basicProfile.Rd man/mergeProfilesLists.Rd man/equivSummary.Rd inst/doc/goProfiles.pdf inst/doc/goProfiles.R inst/doc/goProfiles-comparevisual.pdf inst/doc/goProfiles-plotProfileMF.pdf