Files in isobar
Analysis and quantitation of isobarically tagged MSMS proteomics data
BinaryFiles
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/ibspiked_set1.rda
data/noise.model.hcd.rda
data/ibspiked_set2.rda
data/datalist
data/ib_phospho.rda
R/MSnSet-methods.R
R/Tlsd-class.R
R/metareport-utils.R
R/utils.R
R/distr-methods.R
R/ProteinGroup-class.R
R/isobar-import.R
R/report-utils-tex.R
R/NoiseModel-class.R
R/zzz.R
R/report-utils.R
R/IBSpectra-class.R
R/report-utils-xls.R
R/ptm-methods.R
R/sharedpep-methods.R
R/IBSpectra-plots.R
R/ratio-methods.R
vignettes/isobar.Rnw
vignettes/isobar_lib.bib
vignettes/isobar-ptm.Rnw
vignettes/isobar-usecases.Rnw
vignettes/isobar-devel.Rnw
man/isobar-package.Rd
man/isobar-data.Rd
man/human.protein.names.Rd
man/Tlsd-class.Rd
man/getPeptideModifContext.Rd
man/reporter.protein-methods.Rd
man/ratiosReshapeWide.Rd
man/observedKnownSites.Rd
man/number.ranges.Rd
man/isobar-log.Rd
man/peptide.count.Rd
man/fit-distr.Rd
man/distr-methods.Rd
man/isobar-preprocessing.Rd
man/calculate.emPAI.Rd
man/isobar-plots.Rd
man/isobar-import.Rd
man/shared.ratios.Rd
man/shared.ratios.sign.Rd
man/groupMemberPeptides.Rd
man/TlsParameter-class.Rd
man/IBSpectra-class.Rd
man/calc.delta.score.Rd
man/calculate-pvalues.Rd
man/correct.peptide.ratios.Rd
man/ratio-summ.Rd
man/spectra.count2.Rd
man/isobar-reports.Rd
man/utils.Rd
man/specificities.Rd
man/writeHscoreData.Rd
man/subsetIBSpectra.Rd
man/proteinNameAndDescription.Rd
man/getPtmInfo.Rd
man/calc.startpos.Rd
man/maplot.protein.Rd
man/sanitize.Rd
man/proteinInfo-methods.Rd
man/isobar-analysis.Rd
man/calculate.dNSAF.Rd
man/writeIBSpectra.Rd
man/getPhosphoRSProbabilities.Rd
man/NoiseModel-class.Rd
man/ProteinGroup-class.Rd
inst/CITATION
inst/doc/isobar-devel.R
inst/doc/isobar.Rnw
inst/doc/isobar-usecases.pdf
inst/doc/isobar-ptm.Rnw
inst/doc/isobar-usecases.Rnw
inst/doc/isobar-devel.pdf
inst/doc/isobar-ptm.R
inst/doc/isobar.pdf
inst/doc/isobar.R
inst/doc/isobar-devel.Rnw
inst/doc/isobar-usecases.R
inst/doc/isobar-ptm.pdf
inst/report/isobar-qc.Rnw
inst/report/isobar-analysis.Rnw
inst/report/report-utils.tex
inst/report/create_ibspectra.R
inst/report/create_proteingroup.R
inst/report/create_meta_report.R
inst/report/properties.R
inst/report/meta-properties.R
inst/report/create_reports.R
inst/pl/mascotParser2.pl
inst/pl/parsersConfig.xml
inst/pl/modifconv.csv
inst/pl/mascotParserDelta_defunct.pl
inst/pl/mascotParser.ini
inst/pl/tab2psx.pl
inst/pl/psx2tab2.pl
inst/pl/tab2xlsx.pl
inst/pl/pidresParser.ini
inst/pl/tab2xls.pl
inst/pl/pidresParser2.pl
inst/pl/msgfpParser.R
