getPeptideModifContext: Get context of modification
In isobar: Analysis and quantitation of isobarically tagged MSMS proteomics data
Description
Gets neighboring amino acids around modification which can be used to find enriched motifs.
Usage
1
getPeptideModifContext(protein.group, modif, n.aa.up = 7, n.aa.down = 7)
Arguments
protein.group
ProteinGroup object.
modif
Modification of interest.
n.aa.up
Number of AA downstream to report.
n.aa.down
Number of AA upstream to report.
isobar documentation built on Nov. 8, 2020, 7:48 p.m.
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Description
Gets neighboring amino acids around modification which can be used to find enriched motifs.
Usage
1 | getPeptideModifContext(protein.group, modif, n.aa.up = 7, n.aa.down = 7)
|
Arguments
protein.group |
ProteinGroup object. |
modif |
Modification of interest. |
n.aa.up |
Number of AA downstream to report. |
n.aa.down |
Number of AA upstream to report. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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