Description Usage Arguments Author(s) See Also Examples
View source: R/IBSpectra-class.R
Returns an IBSpectra object which is a subset of the input, excluding or exclusively containing the peptides or proteins supplied.
1 2 3 | subsetIBSpectra(x, protein = NULL, peptide = NULL,
direction = "exclude",
specificity = c(REPORTERSPECIFIC, GROUPSPECIFIC, UNSPECIFIC), ...)
|
x |
IBSpectra object. |
protein |
Protein group identifiers. Use |
peptide |
Peptide sequences. |
direction |
either 'include' or 'exclude'. |
specificity |
When 'protein' is supplied: Which peptides should
be selected? See |
... |
Further arguments passed to |
Florian P Breitwieser
protein.g
, spectrumSel
, specificities
1 2 3 4 5 6 7 | data(ibspiked_set1)
# get Keratin proteins
keratin.proteins <- protein.g(proteinGroup(ibspiked_set1),"Keratin")
# exclude Keratin proteins
subsetIBSpectra(ibspiked_set1,protein=keratin.proteins,direction="exclude")
|
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