Files in isobar
Analysis and quantitation of isobarically tagged MSMS proteomics data

DESCRIPTION
NAMESPACE
BinaryFiles
README.md
NEWS
R/zzz.R R/utils.R R/NoiseModel-class.R R/ptm-methods.R R/report-utils-tex.R R/ProteinGroup-class.R R/metareport-utils.R R/isobar-import.R R/report-utils-xls.R R/MSnSet-methods.R R/report-utils.R R/IBSpectra-plots.R R/ratio-methods.R R/distr-methods.R R/IBSpectra-class.R R/Tlsd-class.R R/sharedpep-methods.R
vignettes/isobar-ptm.Rnw
vignettes/isobar-usecases.Rnw
vignettes/isobar_lib.bib
vignettes/isobar-devel.Rnw
vignettes/isobar.Rnw
inst/CITATION
inst/doc/isobar-devel.R inst/doc/isobar.R inst/doc/isobar-usecases.pdf
inst/doc/isobar-usecases.Rnw
inst/doc/isobar-ptm.R
inst/doc/isobar-devel.Rnw
inst/doc/isobar-devel.pdf inst/doc/isobar-usecases.R inst/doc/isobar-ptm.pdf
inst/doc/isobar.Rnw
inst/doc/isobar-ptm.Rnw
inst/doc/isobar.pdf
inst/pl/tab2xlsx.pl
inst/pl/pidresParser2.pl
inst/pl/mascotParserDelta_defunct.pl
inst/pl/tab2psx.pl
inst/pl/tab2xls.pl
inst/pl/parsersConfig.xml
inst/pl/mascotParser.ini
inst/pl/pidresParser.ini
inst/pl/msgfpParser.R
inst/pl/psx2tab2.pl
inst/pl/modifconv.csv
inst/pl/mascotParser2.pl
inst/report/report-utils.tex
inst/report/properties.R inst/report/create_proteingroup.R inst/report/meta-properties.R
inst/report/isobar-analysis.Rnw
inst/report/create_ibspectra.R
inst/report/isobar-qc.Rnw
inst/report/create_meta_report.R inst/report/create_reports.R
build/vignette.rds
man/getPtmInfo.Rd man/reporter.protein-methods.Rd man/isobar-data.Rd man/utils.Rd man/isobar-package.Rd man/shared.ratios.Rd man/specificities.Rd man/observedKnownSites.Rd man/getPeptideModifContext.Rd man/isobar-preprocessing.Rd man/number.ranges.Rd man/calc.startpos.Rd man/isobar-analysis.Rd man/TlsParameter-class.Rd man/ratio-summ.Rd man/isobar-log.Rd man/maplot.protein.Rd man/IBSpectra-class.Rd man/subsetIBSpectra.Rd man/peptide.count.Rd man/distr-methods.Rd man/correct.peptide.ratios.Rd man/calculate-pvalues.Rd man/proteinNameAndDescription.Rd man/isobar-plots.Rd man/writeIBSpectra.Rd man/getPhosphoRSProbabilities.Rd man/ratiosReshapeWide.Rd man/sanitize.Rd man/Tlsd-class.Rd man/isobar-import.Rd man/shared.ratios.sign.Rd man/spectra.count2.Rd man/proteinInfo-methods.Rd man/fit-distr.Rd man/isobar-reports.Rd man/ProteinGroup-class.Rd man/writeHscoreData.Rd man/calc.delta.score.Rd man/calculate.emPAI.Rd man/calculate.dNSAF.Rd man/NoiseModel-class.Rd man/human.protein.names.Rd man/groupMemberPeptides.Rd
data/ibspiked_set1.rda
data/noise.model.hcd.rda
data/datalist
data/ib_phospho.rda
data/ibspiked_set2.rda
isobar documentation built on Nov. 17, 2017, 11:52 a.m.