CrossValidationResult-class: Cross Validation Result Class

Description Details Slots Author(s) References

Description

Cross Validation Result Class

Details

Instances of this class store the result of cross validation.

Slots

cross

number of folds for cross validation

noCross

number of CV runs

groupBy

group assignment of samples

perfParameters

collected performance parameters

outerCV

flag indicating outer CV

folds

folds used in CV

cvError

cross validation error

foldErrors

fold errors

noSV

number of support vectors

ACC

cross validation accuracy

BACC

cross validation balanced accuracy

MCC

cross validation Matthews correlation coefficient

AUC

cross validation area under the ROC curve

foldACC

fold accuracy

foldBACC

fold balanced accuracy

foldMCC

fold Matthews correlation coefficient

foldAUC

fold area under the ROC curve

sumAlphas

sum of alphas

Author(s)

Johannes Palme <kebabs@bioinf.jku.at>

References

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.


kebabs documentation built on May 31, 2017, 11:07 a.m.