CrossValidationResult-class: Cross Validation Result Class
In kebabs: Kernel-Based Analysis Of Biological Sequences

Description Details Slots Author(s) References

Cross Validation Result Class

Instances of this class store the result of cross validation.

cross: number of folds for cross validation
noCross: number of CV runs
groupBy: group assignment of samples
perfParameters: collected performance parameters
outerCV: flag indicating outer CV
folds: folds used in CV
cvError: cross validation error
foldErrors: fold errors
noSV: number of support vectors
ACC: cross validation accuracy
BACC: cross validation balanced accuracy
MCC: cross validation Matthews correlation coefficient
AUC: cross validation area under the ROC curve
foldACC: fold accuracy
foldBACC: fold balanced accuracy
foldMCC: fold Matthews correlation coefficient
foldAUC: fold area under the ROC curve
sumAlphas: sum of alphas

Johannes Palme <kebabs@bioinf.jku.at>

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

kebabs documentation built on Nov. 8, 2020, 7:38 p.m.

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README.md KeBABS - An R Package for Kernel Based Analysis of Biological Sequences

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