Files in kebabs
Kernel-Based Analysis Of Biological Sequences

NAMESPACE
DESCRIPTION
R/gridSearch.R R/sequenceKernel.R R/svmModel.R R/kbsvm-methods.R R/kebabsData.R R/parameters.R R/plot-methods.R R/coerce-methods.R R/gappyPair.R R/predict-methods.R R/AllGenerics.R R/positionDependentKernel.R R/explicitRepresentation.R R/annotationSpecificKernel.R R/utils.R R/kebabs.R R/runtimeMessage.R R/symmetricPair.R R/svm.R R/predictionProfile.R R/show-methods.R R/zzz.R R/motif.R R/modelSelection.R R/trainsvm-methods.R R/mismatch.R R/kebabsDemo.R R/performCrossValidation-methods.R R/access-methods.R R/predictsvm-methods.R R/featureWeights.R R/heatmap-methods.R R/spectrum.R R/AllClasses.R
data/TFBS.RData
data/datalist
data/CCoil.RData
man/ROCDataAccessors.Rd man/spectrumKernel.Rd man/SequenceKernel-class.Rd man/explicitRepresentation.Rd man/ModelSelectionResultAccessors.Rd man/SpectrumKernel-class.Rd man/BioVector.Rd man/SymmetricPairKernel-class.Rd man/ControlInformation-class.Rd man/CrossValidationResult-class.Rd man/kebabsOverview.Rd man/featureWeights.Rd man/kebabsCollectInfo.Rd man/evaluatePrediction.Rd man/kbsvm-methods.Rd man/getPredictionProfile-methods.Rd man/LinearKernel.Rd man/performGridSearch.Rd man/BioVector-class.Rd man/SVMAccess.Rd man/KBModelAccessors.Rd man/ROCData-class.Rd man/computeROCandAUC.Rd man/PredictionProfileAccessors.Rd man/sequenceKernel.Rd man/KernelMatrixAccessors.Rd man/positionDependentKernel.Rd man/ExplicitRepresentationAccessors.Rd man/annotationSpecificKernel.Rd man/KBModel-class.Rd man/gappyPairKernel.Rd man/motifKernel.Rd man/heatmap-methods.Rd man/show-methods.Rd man/performModelSelection.Rd man/mismatchKernel.Rd man/GappyPairKernel-class.Rd man/plot-methods.Rd man/getPredProfMixture-methods.Rd man/PredictionProfile-class.Rd man/ModelSelectionResult-class.Rd man/MotifKernel-class.Rd man/CrossValidationResultAccessors.Rd man/SVMInformation-class.Rd man/performCrossValidation-methods.Rd man/kebabsData.Rd man/genRandBioSeqs.Rd man/ExplicitRepresentation-class.Rd man/MismatchKernel-class.Rd man/predict-methods.Rd man/symmetricPairKernel.Rd man/KernelMatrix-class.Rd
src/svm.h
src/FeatureWeightsPosDepC.h
src/IRanges_stubs.c
src/PredictionProfileC.h
src/SymmetricPairC.cpp
src/PredictionC.cpp
src/ByteStringVector.c
src/MotifC.h
src/SymmetricPairC.h
src/MotifC.cpp
src/BitArray.h
src/FeatureWeightsPosDepC.cpp
src/GappyPairC.cpp
src/ksort.h
src/MismatchC.h
src/SparseMatrixHash.h
src/ExplicitRepC.cpp
src/SparseMatrixHash.cpp
src/Rsvm.c
src/FeatureVectorC.h
src/GappyPairC.h
src/R_init_kebabs.cpp
src/Biostrings_stubs.c
src/PredictionC.h
src/PredictionProfileC.cpp
src/IntegerPowers64.h
src/XVector_stubs.c
src/SpectrumC.cpp
src/Kebabs.h
src/Utils.h
src/KernelUtils.h
src/Utils.cpp
src/SpectrumC.h
src/khash.h
src/ByteStringVector.h
src/MismatchC.cpp
src/svm.cpp
src/KernelUtils.cpp
src/ExplicitRepC.h
build/vignette.rds
vignettes/natbib.sty
vignettes/literature.bib
vignettes/JKU_EN_noName.pdf
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/plainnat.bst
vignettes/kebabs.Rnw
vignettes/Heatmap.png
vignettes/bioinf-article.txi
inst/NEWS
inst/CITATION
inst/COPYRIGHT
inst/doc/kebabs.R
inst/doc/kebabs.Rnw
inst/doc/kebabs.pdf inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/SpectrumKernlabKernel.R inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/RunKernel.R
kebabs documentation built on Nov. 17, 2017, 1:20 p.m.