Files in kebabs

Kernel-Based Analysis Of Biological Sequences

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

src/MismatchC.cpp

src/ExplicitRepC.h

src/FeatureWeightsPosDepC.h

src/PredictionC.cpp

src/MotifC.cpp

src/Utils.cpp

src/SpectrumC.h

src/ByteStringVector.c

src/MismatchC.h

src/FeatureWeightsPosDepC.cpp

src/SpectrumC.cpp

src/Kebabs.h

src/ByteStringVector.h

src/svm.cpp

src/SymmetricPairC.cpp

src/SymmetricPairC.h

src/ExplicitRepC.cpp

src/SparseMatrixHash.cpp

src/GappyPairC.cpp

src/KernelUtils.cpp

src/FeatureVectorC.h

src/Rsvm.c

src/IntegerPowers64.h

src/ksort.h

src/IRanges_stubs.c

src/khash.h

src/XVector_stubs.c

src/Utils.h

src/R_init_kebabs.cpp

src/GappyPairC.h

src/SparseMatrixHash.h

src/PredictionProfileC.h

src/svm.h

src/MotifC.h

src/Biostrings_stubs.c

src/BitArray.h

src/KernelUtils.h

src/PredictionC.h

src/PredictionProfileC.cpp

data/TFBS.RData

data/datalist

data/CCoil.RData

R/sequenceKernel.R R/annotationSpecificKernel.R R/kebabsDemo.R R/heatmap-methods.R R/predict-methods.R R/show-methods.R R/spectrum.R R/kebabsData.R R/symmetricPair.R R/positionDependentKernel.R R/AllGenerics.R R/explicitRepresentation.R R/utils.R R/mismatch.R R/modelSelection.R R/parameters.R R/motif.R R/predictsvm-methods.R R/zzz.R R/kbsvm-methods.R R/predictionProfile.R R/runtimeMessage.R R/trainsvm-methods.R R/plot-methods.R R/gridSearch.R R/AllClasses.R R/coerce-methods.R R/performCrossValidation-methods.R R/access-methods.R R/gappyPair.R R/featureWeights.R R/kebabs.R R/svm.R R/svmModel.R

vignettes/literature.bib

vignettes/bioinf-article.txi

vignettes/Heatmap.png

vignettes/natbib.sty

vignettes/kebabs.Rnw

vignettes/plainnat.bst

vignettes/bioinf-bar.png

vignettes/JKU_EN_noName.pdf

vignettes/bioinf.cls

man/show-methods.Rd man/mismatchKernel.Rd man/performModelSelection.Rd man/featureWeights.Rd man/SequenceKernel-class.Rd man/ExplicitRepresentationAccessors.Rd man/motifKernel.Rd man/kebabsData.Rd man/computeROCandAUC.Rd man/sequenceKernel.Rd man/symmetricPairKernel.Rd man/MotifKernel-class.Rd man/getPredProfMixture-methods.Rd man/predict-methods.Rd man/gappyPairKernel.Rd man/BioVector-class.Rd man/performGridSearch.Rd man/positionDependentKernel.Rd man/SpectrumKernel-class.Rd man/SVMInformation-class.Rd man/BioVector.Rd man/KBModelAccessors.Rd man/performCrossValidation-methods.Rd man/PredictionProfileAccessors.Rd man/annotationSpecificKernel.Rd man/ControlInformation-class.Rd man/explicitRepresentation.Rd man/getPredictionProfile-methods.Rd man/GappyPairKernel-class.Rd man/kebabsCollectInfo.Rd man/ModelSelectionResultAccessors.Rd man/kebabsOverview.Rd man/KernelMatrixAccessors.Rd man/spectrumKernel.Rd man/heatmap-methods.Rd man/PredictionProfile-class.Rd man/ROCDataAccessors.Rd man/genRandBioSeqs.Rd man/KernelMatrix-class.Rd man/MismatchKernel-class.Rd man/CrossValidationResultAccessors.Rd man/LinearKernel.Rd man/SymmetricPairKernel-class.Rd man/ExplicitRepresentation-class.Rd man/CrossValidationResult-class.Rd man/SVMAccess.Rd man/ROCData-class.Rd man/ModelSelectionResult-class.Rd man/plot-methods.Rd man/kbsvm-methods.Rd man/KBModel-class.Rd man/evaluatePrediction.Rd

inst/COPYRIGHT

inst/NEWS

inst/CITATION

inst/doc/kebabs.Rnw

inst/doc/kebabs.pdf inst/doc/kebabs.R inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/RunKernel.R inst/examples/UserDefinedSequenceKernel/SpectrumKernlabKernel/SpectrumKernlabKernel.R

kebabs documentation built on Nov. 8, 2020, 7:38 p.m.