SequenceKernel-class: Sequence Kernel Class

In kebabs: Kernel-Based Analysis Of Biological Sequences

Description

Sequence Kernel Class

Details

This class represents the parent class for all sequence kernels. It is an abstract class and must not be instantiated.

Slots

.Data

the kernel function is stored in this slot. It is executed when the kernel matrix is created through invoking the kernel object.

.userDefKernel

indicates whether kernel is user defined or not.

Author(s)

Johannes Palme <[e-mail]>

References

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

kebabs documentation built on Nov. 8, 2020, 7:38 p.m.