PredictionProfile-class: Prediction Profile Class

Description Details Slots Author(s) References

Description

Prediction Profile Class

Details

This class stores prediction profiles generated for a set of biological sequences from a trained model. Prediction profiles show the relevance of individual sequence positions for the prediction result.

Slots

sequences

sequence information for the samples with profiles

baselines

baselines generated from the offset in the model spread
to all sequence positions

profiles

prediction profile information stored as dense matrix with
the rows as samples and the columns as positions in the sample

kernel

kernel used for training the model on which these prediction
profiles are based

Author(s)

Johannes Palme <[email protected]>

References

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.


kebabs documentation built on May 31, 2017, 11:07 a.m.