Prediction Profile Class
This class stores prediction profiles generated for a set of biological sequences from a trained model. Prediction profiles show the relevance of individual sequence positions for the prediction result.
sequence information for the samples with profiles
baselines generated from the offset in the model spread
to all sequence positions
prediction profile information stored as dense matrix with
the rows as samples and the columns as positions in the sample
kernel used for training the model on which these prediction
profiles are based
Johannes Palme <[email protected]>
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.
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