PredictionProfile-class: Prediction Profile Class
In kebabs: Kernel-Based Analysis Of Biological Sequences

Description Details Slots Author(s) References

Prediction Profile Class

This class stores prediction profiles generated for a set of biological sequences from a trained model. Prediction profiles show the relevance of individual sequence positions for the prediction result.

sequences: sequence information for the samples with profiles
baselines: baselines generated from the offset in the model spread
to all sequence positions
profiles: prediction profile information stored as dense matrix with
the rows as samples and the columns as positions in the sample
kernel: kernel used for training the model on which these prediction
profiles are based

Johannes Palme <kebabs@bioinf.jku.at>

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

kebabs documentation built on Nov. 8, 2020, 7:38 p.m.