SymmetricPairKernel-class: Symmetric Pair Kernel Class
In kebabs: Kernel-Based Analysis Of Biological Sequences

Description Details Slots Author(s) References

Symmetric Pair Kernel Class

Instances of this class represent a kernel object for the symmetric pair kernel. The kernel does not compute similarity between single samples but between two pairs of samples based on a regular sequence kernel for single samples. The class is derived from SequenceKernel.

siKernel: single instance kernel
kernelType: type of pair kernel
r: exponent (for details see gappyPairKernel)

Johannes Palme <kebabs@bioinf.jku.at>

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

kebabs documentation built on Nov. 8, 2020, 7:38 p.m.