Symmetric Pair Kernel Class
Instances of this class represent a kernel object for the symmetric pair kernel. The kernel does not compute similarity between single samples but between two pairs of samples based on a regular sequence kernel for single samples. The class is derived from SequenceKernel.
single instance kernel
type of pair kernel
exponent (for details see gappyPairKernel)
Johannes Palme <[email protected]>
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.
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