SymmetricPairKernel-class: Symmetric Pair Kernel Class

Description Details Slots Author(s) References

Description

Symmetric Pair Kernel Class

Details

Instances of this class represent a kernel object for the symmetric pair kernel. The kernel does not compute similarity between single samples but between two pairs of samples based on a regular sequence kernel for single samples. The class is derived from SequenceKernel.

Slots

siKernel

single instance kernel

kernelType

type of pair kernel

r

exponent (for details see gappyPairKernel)

Author(s)

Johannes Palme <[email protected]>

References

http://www.bioinf.jku.at/software/kebabs

J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.


kebabs documentation built on May 31, 2017, 11:07 a.m.