Make a list of gene identifiers into a list of indices for gene sets.
list of character vectors, each vector containing the gene identifiers for a set of genes.
character vector of gene identifiers.
logical, should sets of size zero be removed from the output?
This function used to create input for
identifiers is the vector of Entrez Gene IDs, and
gene.sets is obtained constructed from a database of gene sets,
for example a representation of the Molecular Signatures Database (MSigDB) downloaded from http://bioinf.wehi.edu.au/software/MSigDB.
list of integer vectors, each vector containing the indices of a gene set in the vector
Gordon Smyth and Yifang Hu
There is a topic page on 10.GeneSetTests.
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