plotPeakNumber: Plot the distribution of the peaks number

Description Usage Arguments Value Author(s) Examples

Description

Plot the distribution of the raw peaks number without post-processing. This function not only generates a figure, but also saves the information of peaks number into a file.

Usage

1

Arguments

x

A metaXpara object

...

Additional parameter

Value

The figure name

Author(s)

Bo Wen wenbo@genomics.cn

Examples

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library(faahKO)
xset <- group(faahko)
xset <- retcor(xset)
xset <- group(xset)
xset <- fillPeaks(xset)
peaksData <- as.data.frame(groupval(xset,"medret",value="into"))
peaksData$name <- row.names(peaksData)
para <- new("metaXpara")
rawPeaks(para) <- peaksData
sampleListFile(para) <- system.file("extdata/faahKO_sampleList.txt", 
    package = "metaX")
plotPeakNumber(para)

metaX documentation built on Oct. 5, 2016, 4:41 a.m.

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