exon_by_gene_with_observed_transcripts: Extract exons by genes for which data are available in...

Description Usage Arguments Value Examples

Description

Extract exons by genes for which data are available in quantification files

Usage

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exon_by_gene_with_observed_transcripts(adb, quantification_files)

Arguments

adb

A valid EnsDb object.

quantification_files

the quantification files. A vector of pathes.

Value

A GRangesList object containing exons by genes for which data are available in quantification files.

Examples

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## Not run: 
   require(EnsDb.Hsapiens.v86)
   edb <- EnsDb.Hsapiens.v86
   quantification_files <- 'file_path'
   ebgwot <- exon_by_gene_with_observed_transcripts(edb, 
                                                   quantification_files)
   bed_file_content_gr <- GRanges("chr16",ranges = IRanges(start=23581002, 
                                                           end=23596356))
   bed_file_filter(ebgwot, bed_file_content_gr)

## End(Not run)

metagene documentation built on Nov. 8, 2020, 5:37 p.m.