get_promoters_txdb: Extract Entrez genes promoters from TxDb object.
In metagene: A package to produce metagene plots
Description
Usage
Arguments
Value
Examples
Description
Extract Entrez genes promoters from TxDb object.
Usage
1
get_promoters_txdb(txdb, upstream = 1000, downstream = 1000)
Arguments
txdb
A valid TxDb object.
upstream
The number of nucleotides upstream of TSS.
downstream
The number of nucleotides downstream of TSS.
Value
A GRanges object that contains the promoters infos.
Examples
1
2
3
4
5
6
## Not run:
# require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
promoters_hg19 <- get_promoters_txdb(txdb)
## End(Not run)
metagene documentation built on Nov. 8, 2020, 5:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Extract Entrez genes promoters from TxDb object.
Usage
1 | get_promoters_txdb(txdb, upstream = 1000, downstream = 1000)
|
Arguments
txdb |
A valid |
upstream |
The number of nucleotides upstream of TSS. |
downstream |
The number of nucleotides downstream of TSS. |
Value
A GRanges object that contains the promoters infos.
Examples
1 2 3 4 5 6 | ## Not run:
# require(TxDb.Hsapiens.UCSC.hg19.knownGene)
txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
promoters_hg19 <- get_promoters_txdb(txdb)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.