write_bed_file_filter_result: Transforms the bed_file_filter function output into a...

In metagene: A package to produce metagene plots

Description

Transforms the bed_file_filter function output into a file.BED readable by metagene.

Usage

write_bed_file_filter_result(bed_file_filter_result, file = "file_name",
  path = "./")

Arguments

bed_file_filter_result	A GRanges object : the output of bed_file_filter function.
file	the name of the output file without the extension
path	The path where the function will write the file

Value

output of write function

Examples

## Not run: 
require(EnsDb.Hsapiens.v86)
edb <- EnsDb.Hsapiens.v86
quantification_files <- 'file_path'
ebgwot <- exon_by_gene_with_observed_transcripts(edb, 
                                                   quantification_files)
bed_file_content_gr <- GRanges("chr16",ranges = IRanges(start=23581002, 
                                                           end=23596356))
bffr <- bed_file_filter(ebgwot, bed_file_content_gr)
write_bed_file_filter_result(bffr, file='test','./')

## End(Not run)

metagene documentation built on Nov. 8, 2020, 5:37 p.m.