Files in metagene
A package to produce metagene plots

DESCRIPTION
README.md
NAMESPACE
LICENSE
NEWS
R/metagene.R R/normalization.R R/demo.R R/permutation.R R/stats.R
R/sysdata.rda
R/plot_metagene.R R/Utilities.R R/data.R R/parallel_job.R R/bam_handler.R inst/unitTests/test_stats.R inst/unitTests/test_permutation.R inst/unitTests/test_metagene_RNAseq.r inst/unitTests/test_parallel_job.R inst/unitTests/test_demo.R inst/unitTests/test_bam_handler.R inst/unitTests/test_metagene.R inst/unitTests/test_utilities.R
inst/unitTests/Makefile
inst/doc/metagene_rnaseq.Rmd inst/doc/metagene.R
inst/doc/metagene.html
inst/doc/metagene_rnaseq.R
inst/doc/metagene_rnaseq.html
inst/doc/metagene.Rmd
inst/extdata/align2_rep1.bam.bai
inst/extdata/align1_rep1.bam.bai
inst/extdata/align1_rep1.bed
inst/extdata/different_header.bam
inst/extdata/list2.txt
inst/extdata/NDUFAB1.bed
inst/extdata/test.gff
inst/extdata/cyto4.bam.bai
inst/extdata/ctrl.bam.bai
inst/extdata/ctrl.bam
inst/extdata/nuc3.bam.bai
inst/extdata/align1.rep1.bam.bai
inst/extdata/align2_rep1.bam
inst/extdata/list1.bed
inst/extdata/DPM1less.bed
inst/extdata/align1_rep2.bam
inst/extdata/cyto3.bam
inst/extdata/cyto4.bam
inst/extdata/NDUFAB1less.bed
inst/extdata/align2_rep2.bam
inst/extdata/list_coverage.bed
inst/extdata/list2.bed
inst/extdata/cyto3.bam.bai
inst/extdata/coverage.bam.bai
inst/extdata/align1_rep1.bam
inst/extdata/DPM1.bed
inst/extdata/coverage.bam
inst/extdata/test.gtf
inst/extdata/different_header.bam.bai
inst/extdata/align2_rep2.bam.bai
inst/extdata/align1_rep2.bam.bai
inst/extdata/nuc3.bam
inst/extdata/nuc4.bam
inst/extdata/design.txt
inst/extdata/lists.bed
inst/extdata/nuc4.bam.bai
inst/extdata/not_indexed.bam
inst/extdata/align1.rep1.bam
inst/extdata/ctrl.bed
inst/extdata/list1.narrowPeak
inst/extdata/list1.broadPeak
inst/extdata/list1.txt
data/promoters_hg19.RData
data/promoters_hg18.RData
data/promoters_mm10.RData
data/promoters_mm9.RData
vignettes/metagene.Rmd vignettes/metagene_rnaseq.Rmd man/get_demo_bam_files.Rd man/promoters_mm10.Rd man/promoters_mm9.Rd man/permutation_test.Rd man/get_demo_metagene.Rd man/write_bed_file_filter_result.Rd man/get_demo_design.Rd man/metagene.Rd man/promoters_hg19.Rd man/exon_by_gene_with_observed_transcripts.Rd man/avoid_gaps_update.Rd man/promoters_hg18.Rd man/plot_metagene.Rd man/get_demo_regions.Rd man/bed_file_filter.Rd man/Bam_Handler.Rd man/get_promoters_txdb.Rd
build/vignette.rds
tests/runTests.R
metagene documentation built on Dec. 23, 2017, 6:21 p.m.