Files in metagene

A package to produce metagene plots

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/promoters_hg19.RData

data/promoters_mm10.RData

data/promoters_hg18.RData

data/promoters_mm9.RData

R/Utilities.R

R/sysdata.rda

R/parallel_job.R R/stats.R R/permutation.R R/metagene.R R/demo.R R/data.R R/normalization.R R/plot_metagene.R R/bam_handler.R vignettes/metagene_rnaseq.Rmd vignettes/metagene.Rmd man/promoters_hg18.Rd man/avoid_gaps_update.Rd man/get_promoters_txdb.Rd man/promoters_hg19.Rd man/bed_file_filter.Rd man/promoters_mm9.Rd man/exon_by_gene_with_observed_transcripts.Rd man/get_demo_bam_files.Rd man/write_bed_file_filter_result.Rd man/get_demo_regions.Rd man/get_demo_metagene.Rd man/promoters_mm10.Rd man/get_demo_design.Rd man/metagene.Rd man/Bam_Handler.Rd man/permutation_test.Rd man/plot_metagene.Rd tests/runTests.R inst/doc/metagene_rnaseq.Rmd inst/doc/metagene_rnaseq.R

inst/doc/metagene.html

inst/doc/metagene.R inst/doc/metagene.Rmd

inst/doc/metagene_rnaseq.html

inst/extdata/align2_rep1.bam

inst/extdata/cyto3.bam.bai

inst/extdata/ctrl.bam

inst/extdata/DPM1.bed

inst/extdata/not_indexed.bam

inst/extdata/align1.rep1.bam

inst/extdata/test.gtf

inst/extdata/list1.txt

inst/extdata/DPM1less.bed

inst/extdata/list1.broadPeak

inst/extdata/align1_rep1.bam.bai

inst/extdata/align2_rep2.bam

inst/extdata/design.txt

inst/extdata/align1.rep1.bam.bai

inst/extdata/align1_rep2.bam

inst/extdata/list_coverage.bed

inst/extdata/nuc4.bam

inst/extdata/ctrl.bed

inst/extdata/cyto3.bam

inst/extdata/list2.bed

inst/extdata/list1.bed

inst/extdata/list2.txt

inst/extdata/align2_rep2.bam.bai

inst/extdata/align1_rep1.bam

inst/extdata/list1.narrowPeak

inst/extdata/coverage.bam.bai

inst/extdata/nuc4.bam.bai

inst/extdata/NDUFAB1less.bed

inst/extdata/align1_rep2.bam.bai

inst/extdata/NDUFAB1.bed

inst/extdata/different_header.bam.bai

inst/extdata/align2_rep1.bam.bai

inst/extdata/coverage.bam

inst/extdata/cyto4.bam

inst/extdata/different_header.bam

inst/extdata/nuc3.bam.bai

inst/extdata/lists.bed

inst/extdata/cyto4.bam.bai

inst/extdata/align1_rep1.bed

inst/extdata/ctrl.bam.bai

inst/extdata/test.gff

inst/extdata/nuc3.bam

inst/unitTests/test_permutation.R inst/unitTests/test_parallel_job.R inst/unitTests/test_stats.R inst/unitTests/test_metagene.R inst/unitTests/test_metagene_RNAseq.r inst/unitTests/test_demo.R

inst/unitTests/Makefile

inst/unitTests/test_bam_handler.R inst/unitTests/test_utilities.R

metagene documentation built on Nov. 8, 2020, 5:37 p.m.