plot_sample_reconstruction_error: Plot reconstruction error for a sample

In musicatk: Mutational Signature Comprehensive Analysis Toolkit

Description

Displays the observed distribution of counts for each mutation type, the distribution of reconstructed counts for each mutation type using the inferred mutational signatures, and the difference between the two distributions.

Usage

plot_sample_reconstruction_error(result, sample, plotly = FALSE)

Arguments

result	A musica_result object generated by a mutational discovery or prediction tool.
sample	Name of the sample within the musica_result object.
plotly	If TRUE, the the plot will be made interactive using plotly. Default FALSE.

Value

Generates a ggplot or plotly object

Examples

data(res)
plot_sample_reconstruction_error(res, "TCGA-ER-A197-06A-32D-A197-08")

musicatk documentation built on Nov. 8, 2020, 5:16 p.m.