plot_signatures: Plots the mutational signatures
In musicatk: Mutational Signature Comprehensive Analysis Toolkit

Description Usage Arguments Value Examples

After mutational signature discovery has been performed, this function can be used to display the distribution of each mutational signature. The color_variable and color_mapping parameters can be used to change the default color scheme of the bars.

plot_signatures(
  result,
  legend = TRUE,
  plotly = FALSE,
  color_variable = NULL,
  color_mapping = NULL,
  text_size = 10,
  facet_size = 10,
  show_x_labels = TRUE,
  same_scale = TRUE
)

`result`	A `musica_result` object generated by a mutational discovery or prediction tool.
`legend`	If `TRUE`, the legend for mutation types will be included in the plot. Default `TRUE`.
`plotly`	If `TRUE`, the the plot will be made interactive using `plotly`. Default `FALSE`.
`color_variable`	Name of the column in the variant annotation data.frame to use for coloring the mutation type bars. The variant annotation data.frame can be found within the count table of the `musica` object. If `NULL`, then the default column specified in the count table will be used. Default `NULL`.
`color_mapping`	A character vector used to map items in the `color_variable` to a color. The items in `color_mapping` correspond to the colors. The names of the items in `color_mapping` should correspond to the uniqeu items in `color_variable`. If `NULL`, then the default `color_mapping` specified in the count table will be used. Default `NULL`.
`text_size`	Size of axis text. Default `10`.
`facet_size`	Size of facet text. Default `10`.
`show_x_labels`	If `TRUE`, the labels for the mutation types on the x-axis will be shown. Default `TRUE`.
`same_scale`	If `TRUE`, the scale of the probability for each signature will be the same. If `FALSE`, then the scale of the y-axis will be adjusted for each signature. Default `TRUE`.