subset_musica_by_counts: Creates a new musica subsetted to only samples with enough...
In musicatk: Mutational Signature Comprehensive Analysis Toolkit
Description
Usage
Arguments
Value
Examples
Description
Creates a new musica subsetted to only samples with enough variants
Usage
1
subset_musica_by_counts(musica, table_name, num_counts)
Arguments
musica
A musica object.
table_name
Name of table used for subsetting
num_counts
Minimum sum count value to drop samples
Value
Returns a new musica object with sample annotations, count tables,
and variants subsetted to only contains samples with the specified minimum
number of counts (column sums) in the specified table
Examples
1
2
data(musica_sbs96)
subset_musica_by_counts(musica_sbs96, "SBS96", 20)
musicatk documentation built on Nov. 8, 2020, 5:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Creates a new musica subsetted to only samples with enough variants
Usage
1 | subset_musica_by_counts(musica, table_name, num_counts)
|
Arguments
musica |
A |
table_name |
Name of table used for subsetting |
num_counts |
Minimum sum count value to drop samples |
Value
Returns a new musica object with sample annotations, count tables, and variants subsetted to only contains samples with the specified minimum number of counts (column sums) in the specified table
Examples
1 2 | data(musica_sbs96)
subset_musica_by_counts(musica_sbs96, "SBS96", 20)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.