getGroups-methods: Retrieve Negative control groups from a flowPlate

In plateCore: Statistical tools and data structures for plate-based flow cytometry

Description

Retrieve a list of negative control-based groups from a flowPlate, based on the information in wellAnnotation.

Usage

getGroups(data,type="Negative.Control",chan, ...)

Arguments

data	A flowPlate dataset.
type	Currently only Negative.Control groups are supported.
chan	Fluorescence channel of interest ("FL1-H", "PE-H", etc.)
...	optional arguments

Value

Returns a list of groups, where each group contains a single negative control well and the associated test well for a particular channel.

Author(s)

Errol Strain

Examples

library(plateCore)
data(plateCore)

# Create a flowPlate from the sample data in plateCore
fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1")

# Create a set of negative control gates and then apply them
negCon <- getGroups(fp,chan="FL1-H")

negCon[1:2]

plateCore documentation built on May 6, 2019, 2:41 a.m.