gutterPlot-methods: gutterPlot

In plateCore: Statistical tools and data structures for plate-based flow cytometry

Description

A Quality Control plot to check the number of events in each channel that are at either their minimum or maximum value. A large number of these events may indicate a problem with the sample.

Usage

gutterPlot(fp, chans = c("FSC-H", "SSC-H", "FL1-H", "FL2-H", "FL3-H", "FL4-H"), ...)

Arguments

fp	A flowPlate.
chans	Channels of interest to show on the gutterPlot.
...	optional arguments

Value

Creates a plot where the x-axis is the different wells in a flowPlate, and the y-axis is the fraction of events at the boundary.

Author(s)

Jon Gosink and Errol Strain

Examples

library(plateCore)
data(plateCore)

## Create a flowPlate
fp <- flowPlate(pbmcPlate,wellAnnotation,"p1001")

gutterPlot(fp,chans=c("FSC-H","SSC-H","FL1-H","FL2-H","FL3-H","FL4-H"))

plateCore documentation built on May 6, 2019, 2:41 a.m.