on-methods: Methods for Function %on% in Package 'plateCore'

In plateCore: Statistical tools and data structures for plate-based flow cytometry

Description

This operator is used to construct a transformFilter that first applies a transformList to the data before applying the filter operation to a flowPlate.

Author(s)

Errol Strain

Examples

library(plateCore)
data(plateCore)

# Create a flowPlate from the sample data in plateCore
fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1")

## Create a rectangle filter
rectGate <- rectangleGate("FSC-H"=c(300,700),"SSC-H"=c(50,400))

xyplot(`FL1-H` ~ `FSC-H` | as.factor(name), 
	transform("FL1-H"=log10) %on% fp, smooth=FALSE, filter=rectGate, displayFilter=FALSE)

plateCore documentation built on May 6, 2019, 2:41 a.m.