group.FIA-proFIAset-method: Group the peaks of an FIA acquisition.
In proFIA: Preprocessing of FIA-HRMS data

Description Usage Arguments Value Examples

Group the peaks in a FIA experiemnts by clustering under an estimated density based on the accuracy in ppm of the mass spectrometer.

## S4 method for signature 'proFIAset'
group.FIA(
  object,
  ppmGroup,
  solvar = FALSE,
  sleep = 0,
  dmzGroup = 5e-04,
  fracGroup = 0.5
)

`object`	A proFIAset object.
`ppmGroup`	A ppm parameter giving the size of the windows considered, we recommend to use 0.5*ppm where ppm is the pp parameter of band detection in the `proFIAset` function.
`solvar`	Shall the group corresponding to solvent signal be kept. This in only useful if solvent signal have been conserved in the `findFIASignal` function.
`sleep`	If not 0 densities are plotted every `sleep` ms.
`dmzGroup`	A minimum mz deviation value which can be considered over the deviation in ppm if it is higher. This account for low mass deviation.
`fracGroup`	The minimum fraction of samples of a class required to make a group.

A proFIAset object with the group slot filled. See proFIAset-class.

if(require("plasFIA")){
#proFIAset object is loaded
data(plasSet)

#Parameters are defined.
ppm_group <- 1
dmz_group <- 0.0005
frac_group<-0.2

plasSet<-group.FIA(plasSet,ppmGroup=ppm_group,fracGroup=frac_group,dmzGroup=dmz_group)
plasSet
}