dimensions: Extract the number of columns and rows for a FASTQ file using...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Extract the number of columns and rows for a FASTQ file using seqTools.
Usage
1
dimensions(fseq, sel)
Arguments
fseq
an object that is the read result of the seq.read function
sel
'reads' for #reads/rows, 'positions' for #positions/columns
Value
a numeric value of the number of reads or the number of positions
Examples
1
2
3
4
infile <- system.file("extdata","10^5_reads_test.fq.gz",
package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
dimensions(fseq,"reads")
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
Description
Extract the number of columns and rows for a FASTQ file using seqTools.
Usage
1 | dimensions(fseq, sel)
|
Arguments
fseq |
an object that is the read result of the seq.read function |
sel |
'reads' for #reads/rows, 'positions' for #positions/columns |
Value
a numeric value of the number of reads or the number of positions
Examples
1 2 3 4 | infile <- system.file("extdata","10^5_reads_test.fq.gz",
package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
dimensions(fseq,"reads")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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