read_base_content: Compute nucleotide content per position for a single base...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Compute nucleotide content per position for a single base pair. Wrapper function around seqTools.
Usage
1
read_base_content(fseq, content)
Arguments
fseq
a seqTools::fastqq object
content
nucleotide. Options are "A","T","G","C","N"(either capital or lower case)
Value
Nucleotide sequence content per position.
Author(s)
Wenyue Xing, wenyue_xing@brown.edu, August Guang august_guang@brown.edu
Examples
1
2
3
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_base_content(fseq,"A")
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Compute nucleotide content per position for a single base pair. Wrapper function around seqTools.
Usage
1 | read_base_content(fseq, content)
|
Arguments
fseq |
a seqTools::fastqq object |
content |
nucleotide. Options are "A","T","G","C","N"(either capital or lower case) |
Value
Nucleotide sequence content per position.
Author(s)
Wenyue Xing, wenyue_xing@brown.edu, August Guang august_guang@brown.edu
Examples
1 2 3 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_base_content(fseq,"A")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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