plot_per_read_quality: Plot the mean quality score per sequence as a histogram. High...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
View source: R/plot_per_read_quality.R
Description
Plot the mean quality score per sequence as a histogram.
High quality sequences are those mostly distributed over 30.
Low quality sequences are those mostly under 30.
plot_per_read_quality
Usage
1
plot_per_read_quality(prq, output_file = NA)
Arguments
prq
Data frame from per_read_quality function
output_file
File to write plot to. Will not write to file if NA. Default NA.
Value
Plot of mean quality score per read
Examples
1
2
3
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
prq <- per_read_quality(infile)
plot_per_read_quality(prq)
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
View source: R/plot_per_read_quality.R
Description
Plot the mean quality score per sequence as a histogram.
High quality sequences are those mostly distributed over 30.
Low quality sequences are those mostly under 30.
plot_per_read_quality
Usage
1 | plot_per_read_quality(prq, output_file = NA)
|
Arguments
prq |
Data frame from per_read_quality function |
output_file |
File to write plot to. Will not write to file if NA. Default NA. |
Value
Plot of mean quality score per read
Examples
1 2 3 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
prq <- per_read_quality(infile)
plot_per_read_quality(prq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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