qual_score_per_read: Calculate the mean quality score per read of the FASTQ...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Calculate the mean quality score per read of the FASTQ gzipped file
Usage
1
qual_score_per_read(infile)
Arguments
infile
A string giving the path for the fastqfile
Value
mean quality per read
Examples
1
2
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
qual_score_per_read(infile)$q50_per_position[1:10]
Example output
[1] 32 32 37 37 37 41 41 41 41 41
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
Description
Calculate the mean quality score per read of the FASTQ gzipped file
Usage
1 | qual_score_per_read(infile)
|
Arguments
infile |
A string giving the path for the fastqfile |
Value
mean quality per read
Examples
1 2 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
qual_score_per_read(infile)$q50_per_position[1:10]
|
Example output
[1] 32 32 37 37 37 41 41 41 41 41
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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