gc_per_read: Calculate GC nucleotide sequence content per read of the...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Calculate GC nucleotide sequence content per read of the FASTQ gzipped file
Usage
1
gc_per_read(infile)
Arguments
infile
A string giving the path for the fastqfile
Value
GC content perncentage per read
Examples
1
2
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
gc_per_read(infile)[1:10]
Example output
[1] 0.43 0.37 0.39 0.40 0.42 0.38 0.39 0.38 0.53 0.35
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
Description
Calculate GC nucleotide sequence content per read of the FASTQ gzipped file
Usage
1 | gc_per_read(infile)
|
Arguments
infile |
A string giving the path for the fastqfile |
Value
GC content perncentage per read
Examples
1 2 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
gc_per_read(infile)[1:10]
|
Example output
[1] 0.43 0.37 0.39 0.40 0.42 0.38 0.39 0.38 0.53 0.35
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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