plot_adapter_content: Creates a bar plot of the top 5 most present adapter...
In qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
View source: R/plot_adapter_content.R
Description
Creates a bar plot of the top 5 most present adapter sequences.
Usage
1
plot_adapter_content(ac_sorted, output_file = NA)
Arguments
ac_sorted
Sorted table of adapters and counts.
output_file
File to save data frame to. Default NA.
Value
Barplot of top 5 most frequent adapter sequences.
Examples
1
2
3
4
5
if(.Platform$OS.type != "windows") {
infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq")
ac_sorted <- adapter_content(infile)
plot_adapter_content(ac_sorted)
}
qckitfastq documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Examples
View source: R/plot_adapter_content.R
Description
Creates a bar plot of the top 5 most present adapter sequences.
Usage
1 | plot_adapter_content(ac_sorted, output_file = NA)
|
Arguments
ac_sorted |
Sorted table of adapters and counts. |
output_file |
File to save data frame to. Default NA. |
Value
Barplot of top 5 most frequent adapter sequences.
Examples
1 2 3 4 5 | if(.Platform$OS.type != "windows") {
infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq")
ac_sorted <- adapter_content(infile)
plot_adapter_content(ac_sorted)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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