Files in seqCAT
High Throughput Sequencing Cell Authentication Toolkit

DESCRIPTION
README.md
NAMESPACE
LICENCE
inst/NEWS
inst/CITATION
inst/python/create_profile.py
inst/doc/seqCAT.Rmd inst/doc/seqCAT.R
inst/doc/seqCAT.html
inst/extdata/test_3.profile.txt.gz
inst/extdata/sample1.vcf.gz
inst/extdata/test_1.profile.txt.gz
inst/extdata/test_4.profile.txt.gz
inst/extdata/test.unannotated.vcf.gz
inst/extdata/test.vcf.gz
inst/extdata/test_2.profile.txt.gz
inst/extdata/example.vcf.gz
inst/extdata/subset_CosmicCompleteTargetedScreensMutantExport.tsv.gz
inst/extdata/subset_CosmicCLP_MutantExport.tsv.gz
vignettes/bibliography.bib
vignettes/seqCAT.Rmd R/read_cosmic.R R/data.R R/compare_profiles.R R/compare_many.R R/read_profile.R R/plot_variant_list.R R/calculate_similarity.R R/list_variants.R R/filter_variants.R R/create_profile.R R/plot_impacts.R R/seqCAT.R R/plot_heatmap.R man/test_profile_1.Rd man/create_profiles.Rd man/plot_impacts.Rd man/list_cosmic.Rd man/filter_variants.Rd man/plot_heatmap.Rd man/test_variant_list.Rd man/read_cosmic.Rd man/test_comparison.Rd man/test_profile_3.Rd man/compare_many.Rd man/plot_variant_list.Rd man/seqCAT.Rd man/calculate_similarity.Rd man/compare_profiles.Rd man/test_profile_2.Rd man/create_profile.Rd man/test_similarities.Rd man/list_variants.Rd man/read_profiles.Rd man/read_profile.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_05_calculate_similarity.R tests/testthat/test_01_create_profile.R tests/testthat/test_08_plot_heatmap.R tests/testthat/test_04_filter_variants.R tests/testthat/test_03_compare_profiles.R tests/testthat/test_06_plot_impacts.R tests/testthat/test_02_read_profile.R tests/testthat/test_09_read_cosmic.R tests/testthat/test_10_list_variants.R tests/testthat/test_07_compare_many.R tests/testthat/test_11_plot_variant_list.R
data/test_variant_list.rda
data/test_profile_1.rda
data/test_profile_2.rda
data/test_similarities.rda
data/test_profile_3.rda
data/test_comparison.rda
seqCAT documentation built on Nov. 1, 2018, 2:07 a.m.