read_profile: Read SNV profile
In seqCAT: High Throughput Sequencing Cell Authentication Toolkit
Description
Usage
Arguments
Details
Value
Examples
Description
Read an SNV profile stored on disk.
Usage
1
read_profile(file, sample_name = NULL)
Arguments
file
The SNV profile to be read (path).
sample_name
Sample name to be added; overrides profile sample if it
already exists (character).
Details
This is a function for reading SNV profiles created from VCF
files that were stored on disk.
Value
A data frame.
Examples
1
2
3
4
5
6
7
# Path to test data
profile = system.file("extdata",
"test_1.profile.txt.gz",
package = "seqCAT")
# Read test profile
profile <- read_profile(profile)
seqCAT documentation built on Nov. 8, 2020, 7:36 p.m.
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Description Usage Arguments Details Value Examples
Description
Read an SNV profile stored on disk.
Usage
1 | read_profile(file, sample_name = NULL)
|
Arguments
file |
The SNV profile to be read (path). |
sample_name |
Sample name to be added; overrides profile sample if it already exists (character). |
Details
This is a function for reading SNV profiles created from VCF files that were stored on disk.
Value
A data frame.
Examples
1 2 3 4 5 6 7 | # Path to test data
profile = system.file("extdata",
"test_1.profile.txt.gz",
package = "seqCAT")
# Read test profile
profile <- read_profile(profile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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