test_similarities: Collated similarities object

Description Usage Format

Description

Collated similarities of multiple sample comparisons from "sample1" and "sample" from the example.vcf file, for use in unit tests.

Usage

1

Format

A dataframe with 3 rows and 6 columns:

sample_1

name of sample 1

sample_2

name of sample 2

overlaps

the number of overlaps for the comparison

matches

the number of matches for the comparison

concordance

the concordance of the profiles

similarity_score

the similarity score of the profiles


seqCAT documentation built on May 30, 2018, 6 p.m.