write_profile: Write SNV profile

In seqCAT: High Throughput Sequencing Cell Authentication Toolkit

Description

Write an SNV profile to a file for later re-use.

Usage

write_profile(profile, file)

Arguments

profile	The SNV profile to be written (data frame).
file	The file to write to (path).

Details

This is a function for writing SNV profiles (created from VCF files) to disk for later re-use. Several formats are allowed, including BED, GTF, GFF and normal text files, which are automatically recognised based on the supplied filename.

Value

None; writes to disk only.

Examples

# Load test profile
data(test_profile_1)

# Write test profile to file
write_profile(test_profile_1, "test_profile_1.txt")

seqCAT documentation built on Nov. 8, 2020, 7:36 p.m.