test_profile_3: SNV profile 3

In seqCAT: High Throughput Sequencing Cell Authentication Toolkit

Description

SNV profile in GRanges format from "sample3", originating from the test_profile_3.txt in the inst/extdata directory, for use in unit tests.

Usage

data(test_profile_3)

Format

A GRanges object with 99 elements and 9 metadata columns:

rsID

mutation ID, if available

REF

reference allele

ALT

alternative allele

DP

total variant depth

AD1

allelic depth, allele 1

AD2

allelic depth, allele 2

A1

allele 1

A2

allele 2

sample

sample name

seqCAT documentation built on Nov. 8, 2020, 7:36 p.m.