difference_score: Difference score
In simplifyEnrichment: Simplify Functional Enrichment Results
Description
Usage
Arguments
Details
Value
Examples
Description
Difference score
Usage
1
difference_score(mat, cl)
Arguments
mat
The similarity matrix.
cl
Cluster labels.
Details
This function measures the different between the similarity values for the terms
that belong to the same clusters and in different clusters. The difference score
is the Kolmogorov-Smirnov statistic between the two distributions.
Value
A numeric scalar.
Examples
1
2
3
4
mat = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds",
package = "simplifyEnrichment"))
cl = binary_cut(mat)
difference_score(mat, cl)
simplifyEnrichment documentation built on Nov. 8, 2020, 5:07 p.m.
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Description Usage Arguments Details Value Examples
Description
Difference score
Usage
1 | difference_score(mat, cl)
|
Arguments
mat |
The similarity matrix. |
cl |
Cluster labels. |
Details
This function measures the different between the similarity values for the terms that belong to the same clusters and in different clusters. The difference score is the Kolmogorov-Smirnov statistic between the two distributions.
Value
A numeric scalar.
Examples
1 2 3 4 | mat = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds",
package = "simplifyEnrichment"))
cl = binary_cut(mat)
difference_score(mat, cl)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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