term_similarity: Similarity between terms based on the overlap of genes
In simplifyEnrichment: Simplify Functional Enrichment Results
Description
Usage
Arguments
Details
Value
Examples
View source: R/similarity_by_overlap.R
Description
Similarity between terms based on the overlap of genes
Usage
1
term_similarity(gl, method = c("kappa", "jaccard", "dice", "overlap"))
Arguments
gl
A list of genes that are in the terms.
method
The similarity measurement.
Details
The definition of the four similarity measurements can be found at https://simplifyenrichment.github.io/supplementary/suppl1_coefficient_definition/suppl1_coefficient_definition.html .
Value
A symmetric matrix.
Examples
1
2
# There is no example
NULL
simplifyEnrichment documentation built on Nov. 8, 2020, 5:07 p.m.
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Description Usage Arguments Details Value Examples
View source: R/similarity_by_overlap.R
Description
Similarity between terms based on the overlap of genes
Usage
1 | term_similarity(gl, method = c("kappa", "jaccard", "dice", "overlap"))
|
Arguments
gl |
A list of genes that are in the terms. |
method |
The similarity measurement. |
Details
The definition of the four similarity measurements can be found at https://simplifyenrichment.github.io/supplementary/suppl1_coefficient_definition/suppl1_coefficient_definition.html .
Value
A symmetric matrix.
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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