simplifyEnrichment: Simplify functional enrichment results

Description Usage Arguments Details Examples

View source: R/simplify.R

Description

Simplify functional enrichment results

Usage

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simplifyEnrichment(mat, method = "binary_cut", control = list(),
    plot = TRUE, term = NULL, verbose = TRUE,
    column_title = qq("@{nrow(mat)} terms clustered by '@{method}'"),
    ht_list = NULL, ...)

Arguments

mat

A similarity matrix.

method

Method for clustering the matrix. See cluster_terms.

control

A list of parameters for controlling the clustering method, passed to cluster_terms.

plot

Whether to make the heatmap.

term

The full name or the description of the corresponding terms.

column_title

Column title for the heatmap.

verbose

Whether to print messages.

ht_list

A list of additional heatmaps added to the left of the similarity heatmap.

...

Arguments passed to ht_clusters.

Details

The usage is the same as simplifyGO, except you need to manually provide the term names by term argument if you want to draw the word clouds.

Examples

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# There is no example
NULL

simplifyEnrichment documentation built on Nov. 8, 2020, 5:07 p.m.