simplifyEnrichment: Simplify functional enrichment results

In simplifyEnrichment: Simplify Functional Enrichment Results

Description

Simplify functional enrichment results

Usage

simplifyEnrichment(mat, method = "binary_cut", control = list(),
    plot = TRUE, term = NULL, verbose = TRUE,
    column_title = qq("@{nrow(mat)} terms clustered by '@{method}'"),
    ht_list = NULL, ...)

Arguments

mat	A similarity matrix.
method	Method for clustering the matrix. See cluster_terms.
control	A list of parameters for controlling the clustering method, passed to cluster_terms.
plot	Whether to make the heatmap.
term	The full name or the description of the corresponding terms.
column_title	Column title for the heatmap.
verbose	Whether to print messages.
ht_list	A list of additional heatmaps added to the left of the similarity heatmap.
...	Arguments passed to ht_clusters.

Details

The usage is the same as simplifyGO, except you need to manually provide the term names by term argument if you want to draw the word clouds.

Examples

# There is no example
NULL

simplifyEnrichment documentation built on Nov. 8, 2020, 5:07 p.m.